GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans

CONSTRUCT
QUICK HELP : 1. Drag & Drop monosaccharides or

2. Build the structure (Create the longest chain first and horizontally) 3. Vizualize it / Download it. More
HELP : If you want an audio guide click here

aDGlcpN
1 aDGlcpN
aDGlcpNAc
1 aDGlcpNAc
aDGlcpNAc_3S
1 aDGlcpNAc_3S
aDGlcpNAc_3S6S
1 aDGlcpNAc_3S6S
aDGlcpNAc_6S
1 aDGlcpNAc_6S
aDGlcpNS
1 aDGlcpNS
aDGlcpNS_3S
1 aDGlcpNS_3S
aDGlcpNS_3S6S
1 aDGlcpNS_3S6S
aDGlcpNS_6S
1 aDGlcpNS_6S
aDGlcpN_3S
1 aDGlcpN_3S
aDGlcpN_3S6S
1 aDGlcpN_3S6S
aDGlcpN_6S
1 aDGlcpN_6S
aL4deoxyIdopA
1 aL4deoxyIdopA
aL4deoxyIdopA_2S
1 aL4deoxyIdopA_2S
aLIdopA_1C4
1 aLIdopA_1C4
aLIdopA_2S0
1 aLIdopA_2S0
aLIdopA_2S_1C4
1 aLIdopA_2S_1C4
aLIdopA_2S_2S0
1 aLIdopA_2S_2S0
aLIdopA_2S_4C1
1 aLIdopA_2S_4C1
aLIdopA_4C1
1 aLIdopA_4C1
bD4deoxyGlcpA
1 bD4deoxyGlcpA
bD4deoxyGlcpA_2S
1 bD4deoxyGlcpA_2S
bDGalp
1 bDGalp
bDGalpNAc
1 bDGalpNAc
bDGalpNAc_4S
1 bDGalpNAc_4S
bDGalpNAc_4S6S
1 bDGalpNAc_4S6S
bDGalpNAc_6S
1 bDGalpNAc_6S
bDGalp_4S
1 bDGalp_4S
bDGalp_6S
1 bDGalp_6S
bDGlcpA
1 bDGlcpA
bDGlcpA_2S
1 bDGlcpA_2S
bDGlcpNAc
1 bDGlcpNAc
bDGlcpNAc_6S
1 bDGlcpNAc_6S
bDXylp_13Ser
1 bDXylp_13Ser
bDXylp_2P_13Ser
1 bDXylp_2P_13Ser

Choose the rotation angle for phi, psi and omega.



Use advanced commands
REPEAT
Generating repeating motifs for regular polysaccharides. Repetition:
nb: liaison : :
( phi: psi: omg: )
GENERATE 3D

Get this molecule
in PDB's Format

OPTIMIZE

Optimize
the molecule
energies

SAVE INPUT

Get this molecule in inp format
or in iupac format

GLYCOCT
Get this molecule in GlycoCT format
or an image in SVG

INPUT

How to cite this work : S. Pérez, A. Sarkar, A. Rivet, C. Breton & A. Imberty (2015) Glyco3D : A portal for structural glycosciences. Meth. Mol. Biol. 1273, 241-258