GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans

CONSTRUCT
QUICK HELP : 1. Drag & Drop monosaccharides or
2. Build the structure (Create the longest chain first and horizontally) 3. Vizualize it / Download it. More
HELP : If you want an audio guide click here

aDGlcpN

1 aDGlcpN

aDGlcpNAc

1 aDGlcpNAc

aDGlcpNAc_3S

1 aDGlcpNAc_3S

aDGlcpNAc_3S6S

1 aDGlcpNAc_3S6S

aDGlcpNAc_6S

1 aDGlcpNAc_6S

aDGlcpNS

1 aDGlcpNS

aDGlcpNS_3S

1 aDGlcpNS_3S

aDGlcpNS_3S6S

1 aDGlcpNS_3S6S

aDGlcpNS_6S

1 aDGlcpNS_6S

aDGlcpN_3S

1 aDGlcpN_3S

aDGlcpN_3S6S

1 aDGlcpN_3S6S

aDGlcpN_6S

1 aDGlcpN_6S

aL4deoxyIdopA

1 aL4deoxyIdopA

aL4deoxyIdopA_2S

1 aL4deoxyIdopA_2S

aLIdopA_1C4

1 aLIdopA_1C4

aLIdopA_2S0

1 aLIdopA_2S0

aLIdopA_2S_1C4

1 aLIdopA_2S_1C4

aLIdopA_2S_2S0

1 aLIdopA_2S_2S0

aLIdopA_2S_4C1

1 aLIdopA_2S_4C1

aLIdopA_4C1

1 aLIdopA_4C1

bD4deoxyGlcpA

1 bD4deoxyGlcpA

bD4deoxyGlcpA_2S

1 bD4deoxyGlcpA_2S

bDGalp

1 bDGalp

bDGalpNAc

1 bDGalpNAc

bDGalpNAc_4S

1 bDGalpNAc_4S

bDGalpNAc_4S6S

1 bDGalpNAc_4S6S

bDGalpNAc_6S

1 bDGalpNAc_6S

bDGalp_4S

1 bDGalp_4S

bDGalp_6S

1 bDGalp_6S

bDGlcpA

1 bDGlcpA

bDGlcpA_2S

1 bDGlcpA_2S

bDGlcpNAc

1 bDGlcpNAc

bDGlcpNAc_6S

1 bDGlcpNAc_6S

bDXylp_13Ser

1 bDXylp_13Ser

bDXylp_2P_13Ser

1 bDXylp_2P_13Ser

Choose the rotation angle for phi, psi and omega.

Use advanced commands

REPEAT
Generating repeating motifs for regular polysaccharides. Repetition:

nb: liaison : :
( phi: psi: omg: )

GENERATE 3D

Get this molecule
in PDB's Format

OPTIMIZE

Optimize
the molecule
energies

SAVE INPUT

Get this molecule in inp format
or in iupac format

GLYCOCT
Get this molecule in GlycoCT format
or an image in SVG

© CERMAV CNRS

How to cite this work : S. Pérez, A. Sarkar, A. Rivet, C. Breton & A. Imberty (2015) Glyco3D : A portal for structural glycosciences. Meth. Mol. Biol. 1273, 241-258