GAG BUILDER : A user friendly tool to build 3D structures of GlycosAminoGlycans

CONSTRUCT
QUICK HELP : 1. Drag & Drop monosaccharides or

2. Build the structure (Create the longest chain first and horizontally) 3. Vizualize it / Download it. More
bDGalp
1 bDGalp
bDGalp_4S
1 bDGalp_4S
bDGalp_6S
1 bDGalp_6S
bDGalpNAc
1 bDGalpNAc
bDGalpNAc_4S
1 bDGalpNAc_4S
bDGalpNAc_4S6S
1 bDGalpNAc_4S6S
bDGalpNAc_6S
1 bDGalpNAc_6S
aDGlcpNAc
1 aDGlcpNAc
aDGlcpNAc_3S
1 aDGlcpNAc_3S
aDGlcpNAc_3S6S
1 aDGlcpNAc_3S6S
aDGlcpNAc_6S
1 aDGlcpNAc_6S
aDGlcpN
1 aDGlcpN
aDGlcpN_3S
1 aDGlcpN_3S
aDGlcpN_3S6S
1 aDGlcpN_3S6S
aDGlcpN_6S
1 aDGlcpN_6S
aDGlcpNS
1 aDGlcpNS
aDGlcpNS_3S
1 aDGlcpNS_3S
aDGlcpNS_6S
1 aDGlcpNS_6S
aDGlcpNS_3S6S
1 aDGlcpNS_3S6S
bDGlcpNAc
1 bDGlcpNAc
bDGlcpNAc_6S
1 bDGlcpNAc_6S
bDGlcpA
1 bDGlcpA
bDGlcpA_2S
1 bDGlcpA_2S
aLIdopA_1C4
1 aLIdopA_1C4
aLIdopA_2S_1C4
1 aLIdopA_2S_1C4
aLIdopA_2S0
1 aLIdopA_2S0
aLIdopA_2S_2S0
1 aLIdopA_2S_2S0
aLIdopA_4C1
1 aLIdopA_4C1
aLIdopA_2S_4C1
1 aLIdopA_2S_4C1
aL4deoxyIdopA
1 aL4deoxyIdopA
aL4deoxyIdopA_2S
1 aL4deoxyIdopA_2S
bD4deoxyGlcpA
1 bD4deoxyGlcpA
bD4deoxyGlcpA_2S
1 bD4deoxyGlcpA_2S
bDXylp_2P_13Ser
1 bDXylp_2P_13Ser
bDXylp_13Ser
1 bDXylp_13Ser

Choose the rotation angle for phi, psi and omega.



REPEAT
Generating repeating motifs for regular polysaccharides. Repetition:
nb: liaison : :
(phi: psi: omg: )
GENERATE 3D

Get this molecule
in PDB's Format

OPTIMIZE

Optimize
the molecule
energies

SAVE INPUT


Get this molecule in INP format


How to cite this work : S. Pérez, A. Sarkar, A. Rivet, C. Breton & A. Imberty (2015) Glyco3D : A portal for structural glycosciences. Meth. Mol. Biol. 1273, 241-258